Living organisms are multi-scale constructs. However, whether we consider gigantic mammals or unicellular Paramecium caudatum, all the behaviours they present are to some extent direct effects of the processes that occur at cellular level. It is at the nanoscale, with all its specification and limitations, where basic activities as genome proliferation, breeding, organ formation, tissue maintenance etc. have its origin. Because this world is alien to our senses and intuition humankind had a little curiosity in exploring it. Indeed, our interest in what happens at the nanoscale started recently with the Richard Feynman´s famous lecture “There's Plenty of Room at the Bottom” from the year 1959. Visionaries of that time theorised about worlds being filled with nanoscale robots constantly changing man´s environment. Some prophesied “The Diamond Age” - as Neal Stephenson titled his work. Despite the passage of time, nanosciences are still regarded as the ultimate goal of control over matter. It is not yet explored entirely, and still has a great potential for research development. We have realised that “subduing earth” (Gen 1:28) means not only controlling with elan vast energies and amounts of matter, but the challenge lays also in operating with painstakingly precision and efficacy. A perfect example of dealing with such complexity is the miniaturisation trend that affected consumers electronics, resulting in an emergence of new technologies and tools. Nanotechnology has truly gone long way from the theory, through the scientific research, to its application in our daily lives. Electronic devices are becoming continuously and relentlessly more and more present in virtually every aspect of our lives. Little by little these innovations are arriving also into the field of medicine. New tools originating from various scientific fields, such as: material science, biotechnology, chemistry, physics, engineering or medicine are appearing and find their real-life application. The scientific method, applied to interdisciplinary fields, enables studying, taming and finally utilizing natural biological processes to cure diseases, extend lifespan and enhance the quality of life. The work presented in this thesis aims to contribute to these efforts. Within its scope are two nanoscopic systems that have their prospective use in medicine. They are nanometric lipidic vesicles and protein nanoparticles named Inclusion Bodies (IBs). In the first part of the thesis we will focus on characterization of vesicular systems that have prospective use as drug delivery systems (DDS). Proprietary solutions based on closed compartments made of lipidic bilayer already exist. However this rich field is vast and there is still plenty to discover. Specifically, we will focus on characterization of mechanical properties of vesicles comparing two systems: liposomes (based on phospholipids) and quatsomes (based on quaternaty ammonia amphyphiles). We will also inquire into how the preparation route influences their mechanical properties studying their interactions with substrates by instrumental analysis. Those properties have a vital impact on key processes that determine drug´s efficacy: assimilation, circulation and internalization. The second part of this work will focus on a novel particulate biomaterial, Inclusion Bodies (IBs), in the light of tissue engineering. This new material is very promising, as IBs are pure, highly hydrated and mechanically stable protein nanoparticles. They are easy to produce and commonly formed in recombinant bacteria enabling production on a scale up to the industrial level. They are porous, highly hydrated and insoluble in water. Their properties, such as size or biological activity can be easily fine tuned modifying the genetic background of the producing bacteria. As it is a fully biocompatible material we will use them to engineer surfaces and explore their interactions with model cells by quantifying their impact on various aspects of cell behaviour. The accomplishments presented in this thesis may be considered minor, especially in comparison with the visions unfolded in the first paragraph of this introduction. Nevertheless, the progress they represent is, even if humbly, yet firmly aiming towards the foreseen direction.